The project UNE1403, Prodessor of Soil Systems Biology, was established between UNE and CRDC in 2014. Dr Oliver Knox was recruited from Scotland’s Rural College (SRUC) to the post marking his return to Australia and the cotton industry. In the first few months of the project the Cotton Hub at UNE was established and the remit of this aggregation of academics established. Over the past five years the Cotton Hub, under Oliver’s coordination, has been privileged to host the CRDC board twice at UNE, to develop a network of no fewer than 25 academics across five of UNE’s nine schools, support several PhD candidates and foster more collaborative responses to funding calls, both within UNE and in collaboration with other research partners. The Cotton Hub has also generated several Spotlight and Cottongrower articles to increase the industry awareness of research activities associated with the hub as well as developing a growing social media presence via both an on-line blog and the Twitter handle @CottonHubUNE.

The research conducted under this project has also resulted in a modified and improved method for the passive recovery of free living soil nematodes from heavy clay soils, such as the grey and brown vertosols that much of the industry relies on. The method represents a saving in sample processing time as well as a reduction in potential sample size, in theory making more rapid nematode recovery and analysis possible.

In addition to this, the work has used capacitance probe data sets to establish the extent of the industry where cotton is being grown in just the top 60 cm of the profile. The analysis conducted over three seasons from 2015 to 2018, showed that approximately 25% of fields suffer from sub soil constraints that prevent root exploration below 60 cm during peak vegetative growth. These numbers are similar to physical studies conducted through the McIntyre in the 1980’s, but have allowed areas from all of the cotton growing valleys to be studied across most years. The work has gone on to look at the nature of the constraints likely to be reducing root exploration and also observed that where an awareness of the constraint is known and appropriate management is put in place, profit margins remain good. Potential remedial management to alleviate some of these constraints is now being undertaken in other projects.

Border cells were again investigated under this project. Whilst newer cotton varieties have more than those that were commercially available 10 years ago there remains no link with the resistance to wilts or black root rot. Exogenous DNA (exDNA) from these cells was also quantified and appeared to have little effect on these pathogens, but it was also noted that cotton appears to produce less exDNA than peas and maize.

Finally, the project took on the delivery of the Cotton Production Course. The units continue to deliver a scientific approach to aspects of cotton production, protection, system development and position in the wider environment and to attract the majority of their students from industry.

EXECUTIVE SUMMARY

Spray drift, the off-target movement of herbicides and pesticides, negatively impacts agricultural production across Australia. The problem is particularly acute in mixed cropping regions where a diverse range of chemicals may be applied at any given time. Although industry organisations have developed and implemented an impressive set of technologies, education programs and workshops aimed at improving spray solutions across multiple agriculture sectors, the problem persists.

This project used theory and methods from the behavioural sciences to:

1) Identify the main drivers and barriers to engagement in best-practice spray application at three time points: Before spraying, during spraying and after spraying.

2) Identify the number and nature of grower segments based on their current practices before, during, and after spraying.

3) Identify the main leverage points to initiate and sustain behaviour changes to reduce spray drift.

4) Recommend targeted engagement strategies for segments that are not engaged in best-practice spraying.

Using interviews of key industry stakeholders, and an online grower survey we identified seven behaviours that, if adopted, would produce the greatest reduction in spray drift:

1) Before spraying:

a. Using online mapping tools to register crop locations

b. Checking online sources for sensitive areas

c. Discussing spray plans with neighbours.

2) During spraying:

a. Driving at recommended speed

b. Spraying when conditions (Delta-T, low risk of surface inversion, wind speed) were suitable.

3) After spraying:

a. Decontaminating spray equipment appropriately

b. Keeping accurate records.

Audience segmentation analyses identified 3 grower segments for the before-spraying behaviours (Disengaged, Partially engaged and Engaged), 3 grower segments for the during-spray behaviours (Disengaged, Partially engaged and Occasional speeders) and 2 grower segments for the after-spraying behaviours (Disengaged and Engaged). Discriminant analysis identified the primary barriers (classified as capabilities, opportunities and motivations) for each of the behavioural segments that were not engaged in best-practice spray behaviours:

1) Before spraying (Not registering or checking online mapping tools):

a. Not being aware of the mapping tools (capability)

b. Not having the time to check the online sources (opportunity)

c. Not knowing anyone else who used the mapping tool (motivation).

2) Before spraying (Not discussing spray plans with neighbours):

a. Bad relationships between neighbours (capability and motivation)

b. Growers saw no need to discuss plans (motivation).

3) During spraying (Not driving at recommended speed):

a. Not enough time when conditions are suitable (opportunity)

b. Not aware of the link between speed and spray drift (capability)

c. Need to complete job (motivation)

d. Field conditions (opportunity)

e. Perception of reduced efficiency at slower speeds (motivation).

4) During spraying (Not spraying when conditions were suitable):

a. No flexibility with the contractors /staff resulting in spraying when somebody was available to do so regardless of conditions (opportunity)

b. Beliefs that their crop production took precedence, getting the job completed was the priority and spray drift was not an important issue (motivation)

c. Perception that everyone cuts corners and sprays in less than ideal conditions so it was acceptable for them to do so as well (motivation)

d. Knowledge about when conditions were suitable to spray (capability)

e. Perception that no-one would know anyway if they did spray in less than ideal conditions (motivation).

5) After spraying (decontaminating spray equipment):

a. Awareness of the need to decontaminate (capability)

b. Having the time to perform decontamination (opportunity)

c. Having a suitable location to decontaminate (opportunity)

d. Perceiving decontamination as important (motivation).

6) After spraying (keeping accurate records):

a. Awareness of the need to keep records (capability)

b. Forgetfulness (capability)

c. Perception that no-one was going to check anyway (motivation)

d. Not knowing anyone else who kept records (motivation).

Based on these results, we recommended which behaviour change techniques would be most suitable to remove and circumvent these barriers to achieve maximum on-ground impact. Further research is needed to implement and evaluate behaviour change interventions based on the results from the current research. This implementation and evaluation lies outside of the scope of the present project.

Diseases of cotton are of a significant constraint to cotton production and have been identified as key areas for investment by the cotton industry. Sustainability of the Australian cotton industry remains dependent on the continued development and adoption of cultivars that are highly resistant against major soilborne pathogens such as Thielaviopsis basicola, Fusarium oxysporum f. sp. vasinfestum and Verticillium dahliae, and a re-emerging Alternaria leaf spot (ALS) pathogen, Alternaria alternata. Incorporating high yielding traits with disease resistance is a difficult long-term process; and with limited resources, it is not always possible to develop a complete resistant cultivar to all diseases. Therefore, effective management of cotton diseases relies on an integrated approach. a key focus of this project was to identify non-cotton fungicides, novel chemistries and biocontrol agents, which can be integrated into management strategies of major diseases in cotton production systems.

This project has identified a number potential candidates/approaches. Several pathological research gaps that could be further investigated for their efficacy and insights into pathogen biology. These are as follows:

• Non-cotton fungicides A-16148-F and Fungicide 2, and a novel plant extract PlantY provided a potential black root rot (BRR) control, but there was a lack of control consistency and required further assessments;

• In response to the leaf spot outbreak on seedlings in 2017/18 season in southern NSW, Alternaria alternata was a predominant pathogen responsible for the outbreak;

• Mancozeb and Tebuconazole have been granted an emergency application permit on both seedling and mature cotton in the event of a future outbreak;

• Incorporation of a brassica crop could provide a potential alternative practice to suppress the V. dahliae population, but this requires a long-term field assessment for inclusive recommendations;

• BRR and Verticillium wilt pathogens are now widely distributed in NSW, but insights of their biology and diversity are largely unknown. Such knowledge is essential for developing an accurate and rapid detection approach, as well as management strategies;

• Assessing for disinfestation efficacy against BRR and Verticillium wilt pathogens of Farmcleanse-alternative products will be vital for farm hygiene practices;

• Studies focused etiology and epidemiology of a sporadic but important boll rot disease should also be a priority.

State-based agencies such as NSW DPI have historically played an important role in providing responses to industry needs and delivering leadership in cotton pathology. This project built and enhanced research capacity by the appointment of an additional cotton pathologist based at NSW DPI Narrabri. The aim was to retain grower confidence in the cotton industry to provide support and leadership of cotton pathology issues. The appointed team including Dr Duy Le and Aphrika Gregson has collaborated with Queensland cotton pathology team, southern NSW Cotton Crop Protection specialist based at Yanco Agricultural Institute and CottonInfo team. Such collaboration allowed us to investigate into a broad array of plant pathology research activities such as disease surveillance, management and diagnostics.

The autumn edition of CRDC's magazine, Spotlight, takes a look at two innovative new initiatives underway: the research and development corporation collaboration Agricultural Innovation Australia, and the Federal Government’s Business Research and Innovation Initiative. CRDC is excited to be a part of both these initiatives.

Also in this edition, we include several articles on innovative technologies that CRDC is investing in as they come to the field. These exciting developments include a new pest detection app, which will change the way we monitor insects, and new yield prediction software. CRDC has not only supported the development of the software, it has supported much of the foundational research which drives the technology. We were also pleased to collaborate with CSIRO’s Data61 on the On Farm Experiment app, using data through a CRDC Grassroots Grant. Once released, this will be a game changer for growers wanting to do on-farm trials.

These applications are reflective of two of our key focuses for 2021 – increased commercialisation and digital transformation. CRDC and our research partners are currently seeking partners to take these technologies to the commercialisation phase: the next step towards ensuring real, tangible benefits for growers and industry.

Project details: CRDC project ID: MLAB1901

CRDC goal: Click here to select a Goal

CRDC key focus area: Click here to select a KFA

Principal researcher: Dr Maria Manjarrez, Research and Development

Organisation: Microbiology Laboratories Australia

Start date: July 2018

End date: June 2020

Objectives • To verify if the ready to use Test is robust enough to recover infective T. basicola propagules in different soils or farms

• To correlate the levels of T. basicola from field soils or “naturally” infected soils against plant symptoms or disease in cotton

• To determine what other fungi are predominantly involved in causing BRR, if any

Background From the CRDC project 1624 it was concluded that a “ready to use test” selected in that project for quantification of BRR needed to be fine-tuned using “artificially” infected soils. The initial development of the test used one soil type with or without black root rot. The initial quantification using the ready to use test was merely based on the contrasting levels without taking into account what was happening with the plant (disease incidence).

To verify those results, soils with different levels of BRR and with different properties needed to be tested. If the test was robust enough, the end result will be a tool to help reduce the risk associated with the disease.

The test needed also to be adjusted to test for the interaction with other plant pathogens causing root rot as previous results showed that black root rot may be the result of different fungal species acting together to produce the disease. The results may be used to design a multi-species detection test.

Research activities Our team worked with ±50 soil samples with different BRR histories, from different cotton producing regions (Whitton, Hay, Hillston, Griffith, Macquarie, Lachlan, Canargo, etc). Soil samples were used to establish 4 experiments under controlled conditions. In Experiment 1 and 2, trap plants such as green beans, soybean and pansy were used to facilitate and speed up quantification of T. basicola. However, the trap plants used gave variable, unrepeatable results, which made detection of the pathogen unreliable. After adjusting the methodology and by following advice from the CRDC research team, experiments 3 and 4 were setup using Sicot 620 cotton seeds supplied by Cotton Seed Distributors (CSD). Both experiments gave repeatable results when using the ready to use test with some statistically significant data. Statistical correlations were achieved between BRR levels and reduction of cotton seedlings biomass under controlled conditions. The test was also detecting other pathogenic fungi such as Fusarium and Verticillium.

Outputs From the total number of soil samples, results showed that 8 samples had below detectable level or zero colonies, 6 sites had less than 10 BRR/g soil, 8 had 10-30 BRR/g soil, 11 samples had 30-100 colonies and 9 samples had more than 100 colonies (up to 2000)/g soil after the soils were planted with cotton for 6-10 weeks under controlled conditions. T. basicola also varied depending on the “dilution” of the original soil (from 20% to 50%) for each site. The sometimes very high variability between the soil dilutions during the testing made correlations not always significant. However, some important results were obtained.

Our project concluded that the ready to use test can achieve with reasonable accuracy, quantification of T. basicola at very low, intermediate and very high levels in soils from different farms or sites, which have different chemical and physical properties. This conclusion came after results showed statistical correlations (and or linear regressions) between shoot dry weights and BRR levels (P= 0.0003). These mathematical models may be used to help reduce the risks associated with the disease.

In addition, results showed that plant biomass started decreasing at just 30 BRR colonies/g of soil, which is new information that could be used to correlate better with what is happening in the plant. There was not big difference in biomass reduction after 100 BRR colonies/g soil, however some soils showed up to 1500 BRR colonies/g of soil after planting cotton under controlled conditions.

Another important result was the detection of other pathogenic fungi such as Fusarium and Verticillium using the ready to use test. Although there were no significant correlations between the levels of these fungi and the reduction in cotton seedling biomass, results can be used to better manage seedling diseases in such a cases as fungicide management.

Impacts As results showed a mathematical correlation between BRR levels with biomass reduction (and root “quality”), the ready to use test could be used to reduce the risks associated with the disease (at least partially as other factors may be involved in this complex production system). In discussing the results, we see an opportunity for new cutting-edge data analytics to be paired with the mathematical model so it can “learn” to predict the disease incidence better in the near future so farmers can fully take advantage of this tool.

Key publications 1.Participation at Australian Soil Science conference (suspended for 2020) but will be attending in 2021

2.FUSCOM 2020 presentations- Farmers (October) and Scientific (November, 2020)

3.Twitter

4.Honours Project: “Can Trichoderma and Bacillus be used as biocontrol agents against T. Basicola (BRR) in cotton?” An in-vitro study. Fabiel Hernandez-Espinosa. International Student. 2020. He will be presenting at FUSCOM 2020, scientific program.

Appendix 1

Example of Report generated after soil samples were tested using the Ready to use test. One report per soil sample.

The Australian cotton industry and communities in regions where cotton is grown will continue to experience change challenges associated with drought and water policy, population dynamics, technology adoption and other ongoing growth and decline transitions into the future. Considering the attendant social, ecological and economic impacts of these and other challenges, the cotton industry’s social licence to operate is an important asset for ensuring the industry’s sustainability. The cotton industry’s sustained performance in this dynamic environment depends on the skills and capacities of the agricultural and general service sectors, and of the regional communities where the industry is located. Supporting community resilience and adaptive capacity in these regions aligns with the industry’s key strategic interests, including in: Workforce (attracting and retaining people and skills to regional towns), Networks (strong networks within the industry and with other sectors); and Communication (stakeholder engagement and maintaining the cotton industry’s social licence). This research project was funded by the Cotton Research and Development Corporation (CRDC) to understand what makes regional communities adaptive and resilient, and how the sector can contribute to supporting community resilience and adaptive capacity in cotton growing regions. The project conducted three resilience assessments with community and cotton sector stakeholders in the regional towns of Goondiwindi, Warren and Walgett. The assessment process helped to define potential roles for the cotton industry, local and state government bodies, and other regional bodies in supporting community resilience.

In furrow irrigated cotton production systems the application of nitrogen fertiliser is required for high yielding crops. If excessive nitrogen fertiliser is added then nitrous oxide is produced. The results show that chambers must be deployed in the hill and skip and irrigation furrows to quantify the greenhouse gas emissions. Further the measured soil temperature and volumetric moisture content and atmospheric temperature, vapour pressure deficit and CO2 concentration inside chambers were periodically different to the field. These differences may result in increased nitrogen and carbon cycling in the chambers relative to the field. In terms of modelling the emissions generated in the chamber will potentially not equate to field conditions and a correction factor will need to be applied.

The field average emission of N2O from an application 240 kg N ha-1 produced 4.17±0.56 kg N2O-N ha-1 during the season. The largest fluxes occurring during the first 3 months after planting of the cotton crop. This indicates that excessive N was present in the soil and was converted to N2O during nitrification and denitrification. The emissions from the hill and the skip and irrigation furrows were different. The hill had the greatest N2O emission and the skip and hill furrows had emissions significantly great than the background. The emissions from the furrows were caused by the deposition of N in the irrigation water or by leaching of N from the hill.

Methane was a small component of the greenhouse gas inventory and approximately 1 kg CH4 ha-1 was consumed by the soil over the 2 year rotation. The CO2 emissions significant differed between the hill and the irrigation furrow during each season. The wheat and cotton NEE was positive from the hill due to the presence of the plants, whereas the furrows were strongly respiring. The overall carbon balance (NBE) indicates that the cotton wheat fallow rotation lost 5 t C ha-1 soil carbon during the 2015-2016 crop rotation. To improve the carbon balance in these cropping systems the bare fallow needs to be eliminated and the use of mulches, plants or polymers in the furrows should be considered.

High yields (> 11 b/ha) were achieved with varieties adapted to hot arid growing conditions. However, fibre lengths were lower than for the same variety grown in southern Australia; cool nights early in fibre development were thought to be the cause. Screening for varieties that can produce longer fibre is continuing. March - April sowing dates produced the highest yields. Progress was made in determining nitrogen fertiliser rates and plant densities. Integrating results from agronomic research with pest management research and developing recommendations for the use of growth regulators are future priorities.

European Carp (Cyprinus carpio) or as it should be called carp, has been present in Australia for more than 130 years.Various strains (at least 4) are present in Australia with the strain &quote;Boolara&quote; which was introduced into the Gippsland in 1960 the main &quote;villain&quote; and responsible for the quite massive invasion into natural waterways of the Murray-Darling basin, the Gippsland area, more recently into Tasmania and as is well documented a major explosion into Queensland this year.